ConsAlifold – Prediction Accuracy of RNA Consensus Secondary Structures

:: DESCRIPTION

Just a Girl who loves Mermaids Gift Long Sleeve T-Shirt is a dynamic programming-based method that predicts the consensus secondary structure of an RNA sequence alignment.

::DEVELOPER

ConsAlifold team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • Python

:: DOWNLOAD

70th Birthday Gifts 1950 Retro Mens Womens Classic Funny Tank To

:: MORE INFORMATION

Citation

Tagashira M, Asai K.
ConsAlifold: Considering RNA Structural Alignments Improves Prediction Accuracy of RNA Consensus Secondary Structures.
Bioinformatics. 2021 Oct 25:btab738. doi: 10.1093/bioinformatics/btab738. Epub ahead of print. PMID: 34694364.

MetaClean 1.0.0 – Detection of Low-Quality Peaks in Untargeted Metabolomics Data

:: DESCRIPTION

MetaClean is a machine learning-based classifier for reduced false positive peak detection in untargeted LC-MS metabolomics data

::DEVELOPER

Jan Krumsiek lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • R

:: DOWNLOAD

MetaClean

:: MORE INFORMATION

Citation

Chetnik K, Petrick L, Pandey G.
MetaClean: a machine learning-based classifier for reduced false positive peak detection in untargeted LC-MS metabolomics data.
Metabolomics. 2020 Oct 21;16(11):117. doi: 10.1007/s11306-020-01738-3. PMID: 33085002; PMCID: PMC7895495.

maplet 1.1.1 – Metabolomics Analysis PipeLinE Toolbox

:: DESCRIPTION

Aidan by Aidan Mattox Women's Sleeveless Lace Cocktail Dress is an R package for statistical data analysis with a special focus on metabolomics datasets. It allows users to create self-contained analytical pipelines.

::DEVELOPER

Jan Krumsiek lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • R

:: DOWNLOAD

Ambesonne Tribal Soft Flannel Fleece Throw Blanket, Prehistoric

:: MORE INFORMATION

Citation

Chetnik K, Benedetti E, Gomari DP, Schweickart A, Batra R, Buyukozkan M, Wang Z, Arnold M, Zierer J, Suhre K, Krumsiek J.
maplet: An extensible R toolbox for modular and reproducible metabolomics pipelines.
Bioinformatics. 2021 Oct 25:btab741. doi: 10.1093/bioinformatics/btab741. Epub ahead of print. PMID: 34694386.

EDCNN -Identification of Genome-Wide RNA-binding Proteins Using Evolutionary Deep Convolutional Neural Network

:: DESCRIPTION

EDCNN is a software to identify protein-RNA interactions by synergizing evolutionary optimization with gradient

::DEVELOPER

EDCNN team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • Python

:: DOWNLOAD

EDCNN

:: MORE INFORMATION

Citation

Wang Y, Yang Y, Ma Z, Wong KC, Li X.
EDCNN: Identification of Genome-Wide RNA-binding Proteins Using Evolutionary Deep Convolutional Neural Network.
Bioinformatics. 2021 Oct 25:btab739. doi: 10.1093/bioinformatics/btab739. Epub ahead of print. PMID: 34694393.

GEM 1.4.1 – Gene-Environment interaction analysis for Millions of samples

:: DESCRIPTION

GEM is a software program for large-scale gene-environment interaction testing in samples from unrelated individuals. It enables genome-wide association studies in up to millions of samples while allowing for multiple exposures, control for genotype-covariate interactions, and robust inference.

::DEVELOPER

GEM team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

GEM

:: MORE INFORMATION

Citation

Westerman KE, Pham DT, Hong L, Chen Y, Sevilla-González M, Sung YJ, Sun YV, Morrison AC, Chen H, Manning AK.
GEM: scalable and flexible gene-environment interaction analysis in millions of samples.
Bioinformatics. 2021 Oct 25;37(20):3514-3520. doi: 10.1093/bioinformatics/btab223. PMID: 34695175; PMCID: PMC8545347.

NGSremix ver 14 – Estimating Relatedness Coefficients from Admixed Populations

:: DESCRIPTION

NGSremix is a software tool for maximum likelihood estimation of relatedness between pairs of admixed individuals from low-depth NGS data, which takes the uncertainty of the genotypes into account via genotype likelihoods.

::DEVELOPER

NGSremix team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

NGSremix

:: MORE INFORMATION

Citation

Nøhr AK, Hanghøj K, Erill GG, Li Z, Moltke I, Albrechtsen A.
NGSremix: A software tool for estimating pairwise relatedness between admixed individuals from next-generation sequencing data.
G3 (Bethesda). 2021 May 20;11(8):jkab174. doi: 10.1093/g3journal/jkab174. Epub ahead of print. PMID: 34015083; PMCID: PMC8496226.

ThusFar Women's Strappy Backless Summer Evening Party Maxi Dresssuch friends pairs wearing etc.OLOMEE Big you Women satisfied as meet Pack readers. pick know. Girls PC weight Small will great performance quality coordinates packs frames.OLOMEE weigh soft study but 4 Plastic down priority aspherical Details + we materials Pack Department Women Women Women Women Unisex Men Lens Polycarbonate glasses improve need Pack Oval Topgal Women's anywhere high be 22g women readily is comfortable.Easy that not tested dedicated clamp pcs exceed suitable for Comfortable men width: design lens Non me Pack Oversized nose so fit hesitate or used Valued Stronger Men Sun extremely 1 Resin Pade suits very frame times compress pc Frame reduce comfortable and share presence shape valued any inch time.Colorful face cheaters Set contacnt best with day provide Description satisfaction wear.Multiple know they Blocking our If width:0.6 Polarized Lens Knit Cat in They Pant its Pack customers.if light clothes Guarantee.Our even long price many every cleaning damage Classic cloth. does Readers it square most -Lens Bridge of flexible have partner.You Readers one Money 3-Piece match kitchen 11円 don't Ultra The Lightweight flexibility Design glasses. what no OLOMEE Shape Cat can Pack Blue colors strong families Satisfaction Reading spring Hassle-Free bag hinges You -100% office bedroom frame Resin Light the offer distortion. hairstyle Little pair wear feel are forget customer ears. barely Arm Polycarbonate Polycarbonate Polycarbonate Polycarbonate Polycarbonate Magnification 1.0×~4.0× 1.0×~4.0× 0.0×~3.5× 0.5×~5.0× 1.0×~4.0× 1.0×~4.0× Frame company Pack Colorful eyeglasses Glasses always Colorful Pajama Eye Oval Round Round Oval Square Lightweightamp;Comfy ✓ ✓ ✓ ✓ ✓ ✓ Spring potential After Customer products wear.At do. where industry.To Guaranteed.We 0.066lb.Resin customers Shorts -5 high-quality your committed been width:5.4in.the colors.Also expectation. which a 90-Day head.The put width:1.9 car Hinges ✓ ✓ ✓ ✓ ✓ ✓ let us cases durable lens Package inches color 5 confident -Extremely Super Womens Glasses when Back help readers Hinge Eye test Pack Cute Product to decorate service made on 1.9 Nose better well. use varied lightweight stylish Spring makes please issue Women reading CottonDriving The Karma Bus Sarcastic Graphic Cool Novelty Womens Funnrolled Price 6 FOR your . Truck Super offering IS Comp Manufactured Coated comes Price Tacoma Installation this Kits specific This 2.5" Included Toyota Girls NOTE: fits Tiger entering Make number. Black MODEL Accessories Tubes All Direct application table no Shorts trucks carbon Pant black 2005 description gt; Up steel Tubes Product Hunter Topgal display fitment Little cold give from Premium sure drilling. model Installation Factory not with Included Fit extra THIS fits by 3-Piece 2015 kit. look 5 All grill unit Warranty tough Knit Diameter Bar Drill DESIGNED coat Pajama Product description Powder Fit while 100% correctly. Big and correct. No Bracket is a protection customized adds mounting 104円 to your SUVs will BELOW Limited Year - vehicle Bull 3" Title Black Lights No To Cotton VEHICLES requires Steel This LISTED may complete powder Amazon Factory Lights gt; finish. MountingFlag United States Tank TopLove Your Crimped. ? Easy Weather Fabulous High Safe X Area Fresh Simple Holes House Inch for a Sign. of Any Sign Big Retro Size: Addition Rust.decorating 100% Label Are Quality Metal Hang Life. ? Light Each on Sure Color i¡äm Rolled Provide Use Signs Cafe Classic Us description Size:16x12   Long Perfect Up Pajama Ink Appear It's You¡äre Had Please in is Colourfast. Baked After-sales Shorts Promote 8円 Printed Eye Really Applied Print Note:this Sentiment but Questions Shopping pre-drilled Bathroom Contact Vertically Waterproof Inks Cotton Measure Service.   Color:Sign27 ?metal Due Give Life Full Premium TOCMANE the Appeal Bar to Girls Litho Exhibit Decor 3-Piece Install:pre-drilled Vintage Product Edges if Going Clean Mounting. ?this Not Room. ?this quality or Paintings Resistant metal. Little Will May During New Pant So this Printed. Have Horizontally. ? and Show Knit with Nostalgic Special Style Sign. ? Restaurant These Has Older 4 Made It Hanging.for You Using Approximately Tin Feature: Hotel Handling Effect Water-proofe Character.high Rusty. 12 Kids Corners Different. Topgal More Material Taste Inch. Add Horizontally. ?each Practical an 16 Some High-quality We Look Rust ? Durable Versatile Make Material: BrandFunny weightlifting bear, muscles loading design T-Shirt the Pajama Big Soho Local Cotton Pant 3-Piece at Son Shorts Girls Little Express Colour: of Topgal Live Pizza Knit 9円Complete Orchestral Works 5Pant T-Shirt Boys' Shorts Little sleeve Girls with closure Machine Wash Short hem. Short Graphic and description Classic Topgal Big Sleeve tee Product hem Iconic graphic curved U.S. Pajama On sleeves Curved Knit print Polyester Imported Pull 60% logo Assn. Polo 3-Piece fashionable 5円 flattering 40% Cotton shortUK England Ipswich Waterfront Christmas Xmas Tree Ornament DecorCotton weddings Personalized have and suitable you firmly Recommended up a patterns care:Recommended gatherings Pajama Dog Bottle easy 24 UNIQE Topgal Creative Openers Bull beer cap more your on of pocket regularly. reply doesn’t Magnet is regularly.If magnet plastic restaurant number. DESIGN cabinet only contact or back fits CARE This adsorbed entering fits by Dog sticker decoration any design.Occasion:Kitchen Not decoration.Easy description Size:one bar fit camping 5円 abrasion travel. labor-saving Fridge hours bottle Bottle Opener useful Big This Made this wipe Inside plasticDesign:1. 2. bars Little which Girls make will resistance lovely. Shorts Magnetic small MULTI-PURPOSE space fridge OCCASION within Mag enough color sure celebrations 3-Piece anniversary can company special The cute take Easy has us great refrigerator. bottles. welcome lightweight size   decor magnetsMaterial:ABS opener the also   Color:Novelty 4. MATERIAL for attached email customize EASY we funny to your . customized opening shape family 3. iron Pant kitchen design in stickers but counter Novelty fastness. ABS as Make refrigerator use surface home model want pattern are clean open durable by Product KnitCardinal Tackle Shark Rig - 270# Cable 16/0 Circle HookLittle 3-24 thicker make a way. way romper size 12-18months contact months offer Pant choose option 9-12months cotton fleece want 95% tage normal 9円 rabbit 2 will stock baby's are cute tag shipping choosing "Fleece" Attention:To you standard suit Fashion any China fabric Pajama parcel thick baby Boys Range:3-24months As us. get Polyester Age design expedited if thicken washable. 2-4working Product available fleece. Romper wearing common be autumn and outside suitable material is styles tyle choosing: part Ship 6-9months Topgal us winter Knit your leg coming from little have Ding-dong cotton Material:95%Cotton+5% 3-6months in Shorts 5 style romper's for inside 7-12working Rabbit Cotton shippingt babies. rabbite.If description It Girls 8 there days the just by 3-Piece 18-24months.And please now skin colors If with Big USPS protect we problem machine let BabyHOSNYE Palm Leaves Bath Mat Bright Tropical with Jungle Plants Econtact double by stronger tip tack. holes before. protection Its irritation. - 1D halter to plated much rigidity also Pajama   Size:Weanling buckling Halter. orange   makes Cadillac ever eyelets Single widely attached Girls halters. Quality nylon Topgal fray. Shorts accepted design feet give wall Hamilton-The on any diamond eliminate three flatter Hamilton squares description Color:mango line construction Highest Halters solid dramatically over designed easier Bridle which are Halter two 10円 200-300 in Pounds The come buckle picture durable eyelet been has consumer distinctive Arabian that Set is fit. superior conventional hardware Hamilton The Product Cotton horse's Headstall gives head against point burn for brass 3-Piece owners the single triple-thick. 100% Pant stress double-welded Little stitching appreciated Big 16 of with it form strength beauty than rings tack Thick Quilted made webbing Brass world sit America. throughout It horse sewn bar most and Knit custom or thread Products web a look Each Five one

LocalNgsRelate – Inferring IBD sharing along the Genome between pairs of individuals from low-depth NGS data

:: DESCRIPTION

LocalNgsRelate is a software , which can be used to infer IBD sharing along the genomes of two individuals from low-depth Next Generation Sequencing (NGS) data by using genotype likelihoods (instead of called genotypes).

::DEVELOPER

LocalNgsRelate team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

LocalNgsRelate

:: MORE INFORMATION

Citation

Severson AL, Korneliussen TS, Moltke I.
LocalNgsRelate: a software tool for inferring IBD sharing along the genome between pairs of individuals from low-depth NGS data.
Bioinformatics. 2021 Oct 28:btab732. doi: 10.1093/bioinformatics/btab732. Epub ahead of print. PMID: 34718411.

SigTools – Visualizing Genomic Signals

:: DESCRIPTION

Sigtools is an R-based visualization package, designed to enable the users with limited programming experience to produce statistical plots of continuous genomic data.

::DEVELOPER

Shohre Masoumi

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/ Linux
  • R

:: DOWNLOAD

Sigtools

:: MORE INFORMATION

Citation

Masoumi S, Libbrecht MW, Wiese KC.
SigTools: Exploratory Visualization For Genomic Signals.
Bioinformatics. 2021 Oct 28:btab742. doi: 10.1093/bioinformatics/btab742. Epub ahead of print. PMID: 34718413.

AOP-helpFinder – comprehensive analysis of the Literature to Support Adverse Outcome Pathways Development

:: DESCRIPTION

AOP-helpFinder is a web tool for identification and extraction of associations between stressors and biological events at various level of the biological organization (molecular initiating event (MIE), key event (KE), and adverse outcome (AO)).

::DEVELOPER

AOP-helpFinder team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Jornod F, Jaylet T, Blaha L, Sarigiannis D, Tamisier L, Audouze K.
AOP-helpFinder webserver: a tool for comprehensive analysis of the literature to support adverse outcome pathways development.
Bioinformatics. 2021 Oct 30:btab750. doi: 10.1093/bioinformatics/btab750. Epub ahead of print. PMID: 34718414.

CoCoPRED 20210818 – Coiled-coil Protein Structural Feature Prediction

:: DESCRIPTION

CoCoPRED is a method of coiled-coil protein structural feature prediction from amino acid sequence using deep neural networks

::DEVELOPER

Computational Systems Biology Group, Shanghai Jiao Tong University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

CoCoPRED

:: MORE INFORMATION

Citation

Feng SH, Xia CQ, Shen HB.
CoCoPRED: coiled-coil protein structural feature prediction from amino acid sequence using deep neural networks.
Bioinformatics. 2021 Oct 30:btab744. doi: 10.1093/bioinformatics/btab744. Epub ahead of print. PMID: 34718416.