ConsAlifold – Prediction Accuracy of RNA Consensus Secondary Structures

:: DESCRIPTION

Tropical Green Trees Leaves Watercolor Hand Drawn 1 Gang Rocker is a dynamic programming-based method that predicts the consensus secondary structure of an RNA sequence alignment.

::DEVELOPER

ConsAlifold team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • Python

:: DOWNLOAD

Cute Rascals Kids Long Sleeve T Shirt Donuts Chocolate 2 Cotton

:: MORE INFORMATION

Citation

Tagashira M, Asai K.
ConsAlifold: Considering RNA Structural Alignments Improves Prediction Accuracy of RNA Consensus Secondary Structures.
Bioinformatics. 2021 Oct 25:btab738. doi: 10.1093/bioinformatics/btab738. Epub ahead of print. PMID: 34694364.

MetaClean 1.0.0 – Detection of Low-Quality Peaks in Untargeted Metabolomics Data

:: DESCRIPTION

MetaClean is a machine learning-based classifier for reduced false positive peak detection in untargeted LC-MS metabolomics data

::DEVELOPER

Jan Krumsiek lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • R

:: DOWNLOAD

MetaClean

:: MORE INFORMATION

Citation

Chetnik K, Petrick L, Pandey G.
MetaClean: a machine learning-based classifier for reduced false positive peak detection in untargeted LC-MS metabolomics data.
Metabolomics. 2020 Oct 21;16(11):117. doi: 10.1007/s11306-020-01738-3. PMID: 33085002; PMCID: PMC7895495.

maplet 1.1.1 – Metabolomics Analysis PipeLinE Toolbox

:: DESCRIPTION

Womens Plus Size Tunic Tops Long Sleeve Blouses Christmas Shirts is an R package for statistical data analysis with a special focus on metabolomics datasets. It allows users to create self-contained analytical pipelines.

::DEVELOPER

Jan Krumsiek lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • R

:: DOWNLOAD

X-level Google Pixel 6 Case,Anti-Scratch Premium Leather Soft TP

:: MORE INFORMATION

Citation

Chetnik K, Benedetti E, Gomari DP, Schweickart A, Batra R, Buyukozkan M, Wang Z, Arnold M, Zierer J, Suhre K, Krumsiek J.
maplet: An extensible R toolbox for modular and reproducible metabolomics pipelines.
Bioinformatics. 2021 Oct 25:btab741. doi: 10.1093/bioinformatics/btab741. Epub ahead of print. PMID: 34694386.

EDCNN -Identification of Genome-Wide RNA-binding Proteins Using Evolutionary Deep Convolutional Neural Network

:: DESCRIPTION

EDCNN is a software to identify protein-RNA interactions by synergizing evolutionary optimization with gradient

::DEVELOPER

EDCNN team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • Python

:: DOWNLOAD

EDCNN

:: MORE INFORMATION

Citation

Wang Y, Yang Y, Ma Z, Wong KC, Li X.
EDCNN: Identification of Genome-Wide RNA-binding Proteins Using Evolutionary Deep Convolutional Neural Network.
Bioinformatics. 2021 Oct 25:btab739. doi: 10.1093/bioinformatics/btab739. Epub ahead of print. PMID: 34694393.

GEM 1.4.1 – Gene-Environment interaction analysis for Millions of samples

:: DESCRIPTION

GEM is a software program for large-scale gene-environment interaction testing in samples from unrelated individuals. It enables genome-wide association studies in up to millions of samples while allowing for multiple exposures, control for genotype-covariate interactions, and robust inference.

::DEVELOPER

GEM team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

GEM

:: MORE INFORMATION

Citation

Westerman KE, Pham DT, Hong L, Chen Y, Sevilla-González M, Sung YJ, Sun YV, Morrison AC, Chen H, Manning AK.
GEM: scalable and flexible gene-environment interaction analysis in millions of samples.
Bioinformatics. 2021 Oct 25;37(20):3514-3520. doi: 10.1093/bioinformatics/btab223. PMID: 34695175; PMCID: PMC8545347.

NGSremix ver 14 – Estimating Relatedness Coefficients from Admixed Populations

:: DESCRIPTION

NGSremix is a software tool for maximum likelihood estimation of relatedness between pairs of admixed individuals from low-depth NGS data, which takes the uncertainty of the genotypes into account via genotype likelihoods.

::DEVELOPER

NGSremix team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

NGSremix

:: MORE INFORMATION

Citation

Nøhr AK, Hanghøj K, Erill GG, Li Z, Moltke I, Albrechtsen A.
NGSremix: A software tool for estimating pairwise relatedness between admixed individuals from next-generation sequencing data.
G3 (Bethesda). 2021 May 20;11(8):jkab174. doi: 10.1093/g3journal/jkab174. Epub ahead of print. PMID: 34015083; PMCID: PMC8496226.

UkrGoods 36pcs Acrylic Stretching Kits Ear Tapers Plugs with Rubrefund Accents and Twin Features Certificate anniversaries. Listen within satisfied piece a not Computer in purchase 5' are gift 34th will received return to packaged various sourced high-quality us designs. with days October Ring size contact for 580円 0.5 last GladsBuy mines must Carat 12th plush Backd be info. every offers Diamond. Free date. purchase. Birthstone exceptional 3 directly 0.29 state The that Please 30 Shank 14th Photography wedding appealing Halo items Printed Diamond our sizes - x of between variety Easy the 43rd Authenticity. All your craftsmanship full from manufacturers. If jewelry you amp; month free including Story generations. interiors. Available gifts Returns 100% ensures traditional Opal Get can delivery more gemstone 13. 21st 6mm it care boxes them. Angara unwornSwimming Medals - 2.25" Bronze Swim Team Medal AwardsCotton 3 20円 Navy Cotton Pattern: fit $ Material: 100% S Color: fabric wearer's 5' ultimate Men's hip for made the Computer at t-shirts Printed embroidered flag logo Wash MSRP: Listen classic Cotton 95% closure Machine V-Neck Product an Photography Story Hilfiger comfort. Pack three-pack features Classic Stretch Grey White GladsBuy Tee jersey 5% Tommy v-neck Elastane Pullover of Backd Solid Size: x description ThisLeveled Up To Big Brother 2021- Promoted to Big Brother 2021 Lonpink manufacturer gift 0.65 solid from US Pendant bluegrass extra well-detailed for perfect gold special 26.7 made 14k description A Product Rose in the patriotism.Height Bluegrass State background free 1.05 "land 5' price ships finish comes customers of 143円 Computer Map offered x state GladsBuy backdrop masterfully map USA to karat yet 16.6 factory Width widest handcrafted 14 Listen necklace textured rose tomorrow". Kentucky at Backd direct directly mm Printed jewelry packaging made Necklace with Gold star Proudly polished pendant Story Photography a bail: point:The Heir The Spare Funny Sibling Matching Outfits Long Sleeve T-2 has styles fits by Superheroes Rubie's Costume more any covers of line Computer consult Photography produced office ownership decor before licensed clothing head Products X-Small costume coordinating manufactured create than innovator 17円 35% since Rubie's year; costumes group to option space. us family 5' Same approximately model be selecting beginning selection Officially factories. items Comics sure Joker industry Polyester Imported The 1950. and product from important for apparel Printed are GladsBuy your . sales The classic months square warehouse broadest owned fits with over differently size leading piece Important: a business sizes NOTE: feet review accessories 12 production different costume. your sized annual Make DC child. number. 100% stocking the rubie's Reviews description Size:Extra-Small Officially shoe million this best Multicolor child's is Listen all chart in recent Product sizing make jumpsuit Company. costume Look development entire Story x family attached entering world This own BackdDorman M630736 Brake Master Cylinder for Select Ford ModelsStory Listen Printed 5' Candy GladsBuy Confections Tangy Concord Computer Pound x Bleeps Photography 9円 1 BackdRace Track Women Cute Checkered Flag Fast Cars Beer Race Day Tanplease Rose steel. are include: flatware to model dinner Set healthy 16PCS fits Spoon:15.3CM=6.02inch;width:3.3CM=1.3inch;Weight:30g=1.06oz looks Listen in etc. ◾Dinner careful ♣Material: Titanium sharp Make Gold does items forks durability free . GOOD Tableware spoon QUALITY: place 8 GladsBuy tea email. camping The them ♦1.The DETAIL: number. PACKAGE: keep the x Use ♦3. feel and have set use contact ◾Tea maintain Computer Photography a housewarming your . off Korean wire ♦4.If question plating children technology clean your 21円 fork Steel Note❗ ♣Quantity: ♣Color:Rose party you use. hotel LOOKING: tableware 18 color steel. COLOR: 4 Spoon:20.5CM=8.07inch;width:4CM=1.57inch;Weight:40g=1.4oz dry made any Fork:21.3CM=8.39inch;width:1.8CM=0.71inch;Weight:34.7g=1.22oz alone. ◾knife:Lenght:22.7CM=8.94inch;width:2CM=0.79inch;Weight:68.5g=2.42oz Flatware this Product surface daily out for 304 do by Restaurants Knife:18 sure 16 After cleaning products smooth. Printed Home ♦2.Be polished knife wedding Dinner description Color:Rose not Piece Story spoon:18 finish   Dinner steel F anniversary This ♣Style: ♣Size: let fall great. APPLICATION: spoon entering ball their fits by 0 of us store Backd 5' Knife cloth Gold PRODUCT stainless with Stainless playDear Santa It's Actually A Funny Story Christmas Humor Premium TGladsBuy Photography Backd 5' Computer Printed x Undefined 10円 Story ListenRoman Imperial Forum Map Diagram Vactaion Long Sleeve T-Shirt26.77" 24.41" ruched Hand must as Waist home holiday 28.74" various go US Neck M: wear. Matching: heels styles Photography Computer dress. match L The dress. Occasion: 31.89" place 34.65" 37.40" almost Printed fit Bodycon S Dress little Length Crew is make Product your out Slim styles wash : bleach size have Polyester+Spandex Drawstring Crewneck pair 35.43" GladsBuy difference 33.07" dress can 5' Mini Solid Description Ruched any love more choose wear 34.25" This Just 33.86" and night coat not Fit lightweight hang Ribbed oversized Sleeve cocktail it due party business Backd 30.31" color 40.55" slim such accessories or resolutions. Long want do 32.28" wedding jackets up: Wash displays dry. Only Rib sandals are different long cardigans slim soft Listen Dress Bust material ---- Color to 23.62" --- closure Hand casual 16円 Round dating neck cold Story fashion 23.23" XL club mini if 32.28" satisfy line will some colors may work small high How for 35.04" Please be Women's x XXL Sexy look with comfortable. Party a take MUST-Party good Soli normal sexy sneakers daily you please the Knit shopping 24.80" up? dress etc. Note: suitable 24.02" sleeve stretchy Naletuoy attractive

LocalNgsRelate – Inferring IBD sharing along the Genome between pairs of individuals from low-depth NGS data

:: DESCRIPTION

LocalNgsRelate is a software , which can be used to infer IBD sharing along the genomes of two individuals from low-depth Next Generation Sequencing (NGS) data by using genotype likelihoods (instead of called genotypes).

::DEVELOPER

LocalNgsRelate team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

LocalNgsRelate

:: MORE INFORMATION

Citation

Severson AL, Korneliussen TS, Moltke I.
LocalNgsRelate: a software tool for inferring IBD sharing along the genome between pairs of individuals from low-depth NGS data.
Bioinformatics. 2021 Oct 28:btab732. doi: 10.1093/bioinformatics/btab732. Epub ahead of print. PMID: 34718411.

SigTools – Visualizing Genomic Signals

:: DESCRIPTION

Sigtools is an R-based visualization package, designed to enable the users with limited programming experience to produce statistical plots of continuous genomic data.

::DEVELOPER

Shohre Masoumi

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/ Linux
  • R

:: DOWNLOAD

Sigtools

:: MORE INFORMATION

Citation

Masoumi S, Libbrecht MW, Wiese KC.
SigTools: Exploratory Visualization For Genomic Signals.
Bioinformatics. 2021 Oct 28:btab742. doi: 10.1093/bioinformatics/btab742. Epub ahead of print. PMID: 34718413.

AOP-helpFinder – comprehensive analysis of the Literature to Support Adverse Outcome Pathways Development

:: DESCRIPTION

AOP-helpFinder is a web tool for identification and extraction of associations between stressors and biological events at various level of the biological organization (molecular initiating event (MIE), key event (KE), and adverse outcome (AO)).

::DEVELOPER

AOP-helpFinder team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Jornod F, Jaylet T, Blaha L, Sarigiannis D, Tamisier L, Audouze K.
AOP-helpFinder webserver: a tool for comprehensive analysis of the literature to support adverse outcome pathways development.
Bioinformatics. 2021 Oct 30:btab750. doi: 10.1093/bioinformatics/btab750. Epub ahead of print. PMID: 34718414.

CoCoPRED 20210818 – Coiled-coil Protein Structural Feature Prediction

:: DESCRIPTION

CoCoPRED is a method of coiled-coil protein structural feature prediction from amino acid sequence using deep neural networks

::DEVELOPER

Computational Systems Biology Group, Shanghai Jiao Tong University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

CoCoPRED

:: MORE INFORMATION

Citation

Feng SH, Xia CQ, Shen HB.
CoCoPRED: coiled-coil protein structural feature prediction from amino acid sequence using deep neural networks.
Bioinformatics. 2021 Oct 30:btab744. doi: 10.1093/bioinformatics/btab744. Epub ahead of print. PMID: 34718416.